U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    B3gnt7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316583, updated on 27-Nov-2024

    Summary

    Official Symbol
    B3gnt7provided by RGD
    Official Full Name
    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7provided by RGD
    Primary source
    RGD:1310580
    See related
    EnsemblRapid:ENSRNOG00000018267 AllianceGenome:RGD:1310580
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in keratan sulfate biosynthetic process; poly-N-acetyllactosamine biosynthetic process; and protein O-linked glycosylation. Predicted to be active in Golgi membrane. Orthologous to human B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 33.8), Lung (RPKM 33.6) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See B3gnt7 in Genome Data Viewer
    Location:
    9q35
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (94404197..94408148)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86956220..86960171)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (93326283..93330234)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 9 Neighboring gene uncharacterized LOC102548542 Neighboring gene transfer RNA proline (anticodon AGG) 49 Neighboring gene small nucleolar RNA, H/ACA box 75 Neighboring gene small nucleolar RNA, C/D box 20 Neighboring gene nucleolin

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables acetylglucosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables acetylglucosaminyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in keratan sulfate biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in keratan sulfate biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in poly-N-acetyllactosamine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein O-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
    Names
    BGnT-7
    beta-1,3-Gn-T7
    beta-1,3-N-acetylglucosaminyltransferase 7
    beta3Gn-T7
    NP_001012134.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012134.1NP_001012134.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7

      See identical proteins and their annotated locations for NP_001012134.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081994
      UniProtKB/Swiss-Prot
      Q66H69
      Related
      ENSRNOP00000024578.4, ENSRNOT00000024578.7
      Conserved Domains (1) summary
      cl21608
      Location:144338
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      94404197..94408148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)