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    phospholipase-like protein (PEARLI 4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829663, updated on 18-Sep-2024

    Summary

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    Official Full Name
    phospholipase-like protein (PEARLI 4) family protein
    Primary source
    TAIR:AT4G35110
    Locus tag
    AT4G35110
    See related
    Araport:AT4G35110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J5.14
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (16712280..16715114, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane intrinsic protein 3 Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085025.2
    NM_001125647.2
    NM_001342325.1
    NM_001342326.1
    NM_119677.3
    NM_179164.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase-like protein (PEARLI 4) family protein
    NP_001078494.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 679 Blast hits to 588 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 141; Fungi - 40; Plants - 275; Viruses - 32; Other Eukaryotes - 107 (source: NCBI BLink).
    NP_001119119.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_195237.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).
    NP_849495.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16712280..16715114 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179164.2 → NP_849495.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849495.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
      Conserved Domains (1) summary
      pfam05278
      Location:161 → 384
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    2. NM_001125647.2 → NP_001119119.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119119.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FVN7, B3H7D4
      Conserved Domains (1) summary
      pfam05278
      Location:173 → 396
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    3. NM_001342325.1 → NP_001329328.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
      Conserved Domains (1) summary
      pfam05278
      Location:161 → 384
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    4. NM_001085025.2 → NP_001078494.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078494.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XYT3, A0A654FVN7, A8MQE1
      Conserved Domains (1) summary
      pfam05278
      Location:176 → 399
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    5. NM_119677.3 → NP_195237.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195237.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
      Conserved Domains (1) summary
      pfam05278
      Location:161 → 384
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    6. NM_001342326.1 → NP_001329327.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY5, A0A384L5B2, A0A654FVN7, O49617
      Conserved Domains (1) summary
      pfam05278
      Location:161 → 384
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)
    Nucleotide Protein
    Heading Accession and Version

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