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    FKBP-like peptidyl-prolyl cis-trans isomerase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820412, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    Primary source
    TAIR:AT3G12340
    Locus tag
    AT3G12340
    See related
    Araport:AT3G12340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (3925498..3929473, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 3 Neighboring gene retinoblastoma-related 1 Neighboring gene Amino acid dehydrogenase family protein Neighboring gene cilia/flagella-associated protein Neighboring gene uncharacterized protein Neighboring gene FKBP-type peptidyl-prolyl cis-trans isomerase Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337988.1
    NM_001337989.1
    NM_112068.9

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    NP_187840.7
    • FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506 BINDING PROTEIN 53 (TAIR:AT4G25340.1); Has 13564 Blast hits to 11813 proteins in 1771 species: Archae - 96; Bacteria - 5418; Metazoa - 3305; Fungi - 956; Plants - 1045; Viruses - 29; Other Eukaryotes - 2715 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3925498..3929473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112068.9 → NP_187840.7  FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187840.7

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J9Q6, Q1G3M4, Q9C7A0, Q9C7C8, Q9LHH4
      UniProtKB/TrEMBL
      A0A654F6E0, A0A7G2EKB4
      Conserved Domains (2) summary
      pfam00254
      Location:406 → 494
      FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
      pfam17800
      Location:3 → 96
      NPL; Nucleoplasmin-like domain

    2. NM_001337988.1 → NP_001326743.1  FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I0, A0A1I9LQ76

    3. NM_001337989.1 → NP_001326744.1  FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6I0, A0A1I9LQ76
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J9Q6.1

    Gene LinkOut

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