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    carboxyl-terminal peptidase (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819029, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal peptidase (DUF239)
    Primary source
    TAIR:AT2G44210
    Locus tag
    AT2G44210
    See related
    Araport:AT2G44210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I1.2
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (18280580..18283014)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pre-mRNA splicing factor domain-containing protein Neighboring gene uncharacterized protein Neighboring gene pre-mRNA splicing factor domain-containing protein Neighboring gene NEP-interacting protein (DUF239) Neighboring gene hypothetical protein (DUF946)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036461.1
    NM_129985.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal peptidase (DUF239)
    NP_001031538.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_030959.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G55360.1); Has 745 Blast hits to 697 proteins in 28 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 10; Plants - 721; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18280580..18283014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129985.3 → NP_030959.1  carboxyl-terminal peptidase (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_030959.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X6W6, A0A654F354, O64856
      Conserved Domains (2) summary
      pfam03080
      Location:185 → 408
      Neprosin
      pfam14365
      Location:48 → 172
      Neprosin_AP; Neprosin activation peptide

    2. NM_001036461.1 → NP_001031538.1  carboxyl-terminal peptidase (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031538.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X6W6, B9DGK6
      Conserved Domains (2) summary
      pfam03080
      Location:215 → 438
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:80 → 202
      DUF4409; Domain of unknown function (DUF4409)
    Nucleotide Protein
    Heading Accession and Version

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