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    Lypd8 Ly6/Plaur domain containing 8 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691259, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lypd8provided by RGD
    Official Full Name
    Ly6/Plaur domain containing 8provided by RGD
    Primary source
    RGD:1586251
    See related
    EnsemblRapid:ENSRNOG00000026844 AllianceGenome:RGD:1586251
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in defense response to Gram-negative bacterium. Predicted to be active in extracellular space. Orthologous to human LYPD8 (LY6/PLAUR domain containing 8). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Liver (RPKM 10.5), Lung (RPKM 8.8) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Lypd8 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (43062261..43073108)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (42561834..42572684)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (43817773..43828812)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene SH3 binding domain protein 5 like Neighboring gene small nucleolar RNA U13 Neighboring gene Y box binding protein 1, pseudogene 15 Neighboring gene BPI fold containing family B, member 9A

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    ly6/PLAUR domain-containing protein 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419311.1NP_001406240.1  ly6/PLAUR domain-containing protein 8 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HET7, D3ZP75
      Related
      ENSRNOP00000034245.4, ENSRNOT00000032816.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      43062261..43073108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109632.1: Suppressed sequence

      Description
      NM_001109632.1: This RefSeq was removed because currently there is support for the protein but not for the 5'' untranslated region included in this sequence.