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    SK10 SKP1-like 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821740, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK10
    Official Full Name
    SKP1-like 10
    Primary source
    TAIR:AT3G21860
    Locus tag
    AT3G21860
    See related
    Araport:AT3G21860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK10; SKP1-like 10
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    Genomic context

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    See SK10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (7699723..7700446, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SKP1-like 7 Neighboring gene SKP1-like 9 Neighboring gene peroxin 22 Neighboring gene cyclin p2;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
    2. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297
    3. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Marrocco K, et al. Plant J, 2006 Feb. PMID 16412087
    4. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113081.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 10
    NP_566695.1
    • SKP1-like 10 (SK10); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 9 (TAIR:AT3G21850.1); Has 1416 Blast hits to 1412 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 530; Fungi - 179; Plants - 530; Viruses - 11; Other Eukaryotes - 166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7699723..7700446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113081.2 → NP_566695.1  SKP1-like 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566695.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LSX8
      UniProtKB/TrEMBL
      A0A654FAQ7
      Conserved Domains (3) summary
      smart00512
      Location:4 → 102
      Skp1; Found in Skp1 protein family
      COG5201
      Location:3 → 149
      SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
      pfam01466
      Location:76 → 149
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSX8.1

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