Transmembrane amino acid transporter family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Transmembrane amino acid transporter family protein
Primary source: TAIR:AT5G65990
Locus tag: AT5G65990
See related: Araport:AT5G65990
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: K2A18.5; K2A18_5
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 2

Sequence:: Chromosome: 5; NC_003076.8 (26394823..26396513)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

AtAVT3 family represents the long sought-for vacuolar amino acid exporters in plants.[AtAVT3A]
Title: Functional identification of AtAVT3, a family of vacuolar amino acid transporters, in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_125996.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables amino acid transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables aromatic amino acid transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed
enables neutral L-amino acid transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
involved_in aromatic amino acid transport	IDA Inferred from Direct Assay more info	PubMed
involved_in neutral amino acid transport	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in vacuolar membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Transmembrane amino acid transporter family protein

NP_201400.1

Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

26394823..26396513

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_125996.5 → NP_201400.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_201400.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q6NNP8, Q9FKY3

UniProtKB/TrEMBL

A0A178ULW2, A0A5S9YJI0

Conserved Domains (1) summary

cl00456
Location:38 → 416

SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain