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    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816307, updated on 18-Sep-2024

    Summary

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    Official Full Name
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Primary source
    TAIR:AT2G17970
    Locus tag
    AT2G17970
    See related
    Araport:AT2G17970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27K22.16; T27K22_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (7818818..7821387, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene Sec1/munc18-like (SM) proteins superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis m(6)A demethylase activity modulates viral infection of a plant virus and the m(6)A abundance in its genomic RNAs. Martínez-Pérez M, et al. Proc Natl Acad Sci U S A, 2017 Oct 3. PMID 28923956, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084442.2
    NM_001202617.2
    NM_001335567.1
    NM_001335568.1
    NM_001335569.1
    NM_001335570.1
    NM_001335571.1
    NM_001335572.1
    NM_001335573.1
    NM_127351.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in demethylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    NP_001077911.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.2); Has 198 Blast hits to 198 proteins in 53 species: Archae - 0; Bacteria - 4; Metazoa - 53; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    NP_001189546.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.2).
    NP_179387.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 213 Blast hits to 213 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7818818..7821387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202617.2 → NP_001189546.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189546.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EAG8, A8MRW3
      Conserved Domains (1) summary
      cl21496
      Location:141 → 337
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. NM_001335568.1 → NP_001324033.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQR3, A0A1P8AYW1

    3. NM_001335572.1 → NP_001324035.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYY9, A0A7G2E736
      Conserved Domains (1) summary
      cl21496
      Location:215 → 401
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    4. NM_001335570.1 → NP_001324031.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQR3, A0A1P8AYV3
      Conserved Domains (1) summary
      cl21496
      Location:215 → 373
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    5. NM_001335571.1 → NP_001324030.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYW4, A0A7G2EAG8
      Conserved Domains (1) summary
      cl21496
      Location:174 → 370
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    6. NM_001335569.1 → NP_001324032.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYW4, A0A7G2EAG8
      Conserved Domains (1) summary
      cl21496
      Location:174 → 370
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    7. NM_127351.3 → NP_179387.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179387.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SL49
      UniProtKB/TrEMBL
      A0A654ETT9, A0A7G2E736
      Conserved Domains (1) summary
      cl21496
      Location:215 → 411
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    8. NM_001335573.1 → NP_001324034.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EAG8, A8MRW3
      Conserved Domains (1) summary
      cl21496
      Location:141 → 337
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    9. NM_001084442.2 → NP_001077911.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077911.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EAG8, A8MRW3
      Conserved Domains (1) summary
      cl21496
      Location:141 → 337
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    10. NM_001335567.1 → NP_001324029.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYT4, A0A7G2E736
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SL49.1

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