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    lncRNA:CR42836 long non-coding RNA:CR42836 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178865, updated on 11-Sep-2024

    Summary

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    Official Symbol
    lncRNA:CR42836provided by FlyBase
    Official Full Name
    long non-coding RNA:CR42836provided by FlyBase
    Primary source
    FLYBASE:FBgn0262025
    Locus tag
    Dmel_CR42836
    See related
    AllianceGenome:FB:FBgn0262025
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR42836; Dmel\CR42836; lincRNA.818
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    Genomic context

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    See lncRNA:CR42836 in Genome Data Viewer
    Location:
    92D2-92D2; 3-68 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20139148..20139921, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (15964870..15965643, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Gustatory receptor 92a Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Neuroligin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus Drosophila. Nyberg KG, et al. Genome Biol Evol, 2016 Jun 27. PMID 27189981, Free PMC Article
    2. Identification of Drosophila Mutants Affecting Defense to an Entomopathogenic Fungus. Lu HL, et al. Sci Rep, 2015 Jul 23. PMID 26202798, Free PMC Article
    3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    4. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
    5. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR42836-RA; Dmel\lncRNA:CR42836-RA; CR42836-RA; Dmel\CR42836-RA
    • lncRNA:CR42836-RB; Dmel\lncRNA:CR42836-RB; CR42836-RB; Dmel\CR42836-RB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      20139148..20139921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_037762.2 RNA Sequence

      Status: REVIEWED

    2. NR_037763.2 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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