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    APRR6 pseudo-response regulator 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843150, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APRR6
    Official Full Name
    pseudo-response regulator 6
    Primary source
    TAIR:AT1G68210
    Locus tag
    AT1G68210
    See related
    Araport:AT1G68210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PRR6; pseudo-response regulator 6; T22E19.16; T22E19_16
    Summary
    Similar to ARR response regulator proteins that function in two-component signal transduction but lacking a conserved D-D-K motif in the receiver domain
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    Genomic context

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    See APRR6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (25565983..25569302)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B-box zinc finger family protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene aerobic coproporphyrinogen-III oxidase (DUF1218) Neighboring gene Reticulon family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two-component signal transduction pathways in Arabidopsis. Hwang I, et al. Plant Physiol, 2002 Jun. PMID 12068096, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphorelay response regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pseudo-response regulator 6
    NP_176988.4
    • pseudo-response regulator 6 (APRR6); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay), regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 1791 Blast hits to 1778 proteins in 154 species: Archae - 0; Bacteria - 186; Metazoa - 1; Fungi - 2; Plants - 1541; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25565983..25569302
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105492.4 → NP_176988.4  pseudo-response regulator 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176988.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HX69, Q9C9F6
      UniProtKB/TrEMBL
      A0A5S9WSX3, A0A654ENQ9
      Conserved Domains (2) summary
      cd17584
      Location:15 → 128
      REC_typeB_ARR-like; phosphoacceptor receiver (REC) domain of type B Arabidopsis response regulators (ARRs) and similar domains
      cl21498
      Location:227 → 273
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9F6.2

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