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    CG5556 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33320, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5556provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031332
    Locus tag
    Dmel_CG5556
    See related
    AllianceGenome:FB:FBgn0031332
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5556
    Summary
    Predicted to enable phosphatase activity. Is expressed in spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5556 in Genome Data Viewer
    Location:
    22A1-22A1; 2-3 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (1351728..1352868, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (1351728..1352868, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45005 Neighboring gene long non-coding RNA:CR45006 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for large domains of similarly expressed genes in the Drosophila genome. Spellman PT, et al. J Biol, 2002. PMID 12144710, Free PMC Article
    2. The B-type lamin is required for somatic repression of testis-specific gene clusters. Shevelyov YY, et al. Proc Natl Acad Sci U S A, 2009 Mar 3. PMID 19218438, Free PMC Article
    3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5556-PA
    CG5556-PB
    NP_001285559.1
    NP_608595.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      1351728..1352868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134751.3 → NP_608595.2  uncharacterized protein Dmel_CG5556, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608595.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQ01, S5NWT1
      Related
      FBpp0077613
      Conserved Domains (2) summary
      pfam13419
      Location:30 → 212
      HAD_2; Haloacid dehalogenase-like hydrolase
      cl21460
      Location:40 → 249
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001298630.1 → NP_001285559.1  uncharacterized protein Dmel_CG5556, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285559.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQ01, S5NWT1
      Conserved Domains (2) summary
      pfam13419
      Location:30 → 212
      HAD_2; Haloacid dehalogenase-like hydrolase
      cl21460
      Location:40 → 249
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VQ01 Q9VQ01

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