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    XIC Myosin family protein with Dil domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837394, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XIC
    Official Full Name
    Myosin family protein with Dil domain-containing protein
    Primary source
    TAIR:AT1G08730
    Locus tag
    AT1G08730
    See related
    Araport:AT1G08730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXIC; F22O13.200; F22O13_200; MYOSIN XI C
    Summary
    Class XI myosin gene
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    Genomic context

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    See XIC in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    38
    Sequence:
    Chromosome: 1; NC_003070.9 (2779438..2788477)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene Protein kinase superfamily protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Class XI Myosins Move Specific Organelles in Pollen Tubes and Are Required for Normal Fertility and Pollen Tube Growth in Arabidopsis. Madison SL, et al. Plant Physiol, 2015 Nov. PMID 26358416, Free PMC Article
    2. Molecular analysis of the myosin gene family in Arabidopsis thaliana. Kinkema M, et al. Plant Mol Biol, 1994 Nov. PMID 7811972
    3. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100746.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cytoskeletal motor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables microfilament motor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within actin filament organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within actin filament-based movement TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within organelle localization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of myosin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Myosin family protein with Dil domain-containing protein
    NP_172349.2
    • XIC; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784; Bacteria - 7621; Metazoa - 29049; Fungi - 4176; Plants - 2435; Viruses - 163; Other Eukaryotes - 13339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2779438..2788477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331787.1 → NP_001321098.1  Myosin family protein with Dil domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8M3, A0A1P8APW4, A0A654E854
      Conserved Domains (5) summary
      PTZ00121
      Location:728 → 1009
      PTZ00121; MAEBL; Provisional
      COG0419
      Location:886 → 1053
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd15475
      Location:1111 → 1496
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 720
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:10 → 48
      Myosin_N; Myosin N-terminal SH3-like domain

    2. NM_100746.3 → NP_172349.2  Myosin family protein with Dil domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172349.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXP9
      UniProtKB/TrEMBL
      A0A178W8M3
      Conserved Domains (5) summary
      smart00242
      Location:71 → 739
      MYSc; Myosin. Large ATPases
      cd15475
      Location:1119 → 1504
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:84 → 728
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:19 → 56
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam03528
      Location:726 → 1055
      Rabaptin; Rabaptin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HXP9.1

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