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    RGPR-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834799, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RGPR-like protein
    Primary source
    TAIR:AT5G47490
    Locus tag
    AT5G47490
    See related
    Araport:AT5G47490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNJ7.8; MNJ7_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (19263826..19270899)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nodulin MtN21 /EamA-like transporter family protein Neighboring gene RGPR-like protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene RAB GTPase homolog A5A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344728.1
    NM_001344729.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RGPR-like protein
    NP_001318753.1
    • RGPR-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: RGPR-related (TAIR:AT5G47480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19263826..19270899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124122.3 → NP_199560.1  RGPR-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199560.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGK8
      UniProtKB/TrEMBL
      A0A178UT59
      Conserved Domains (2) summary
      cd09233
      Location:586 → 956
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      pfam12932
      Location:514 → 638
      Sec16; Vesicle coat trafficking protein Sec16 mid-region

    2. NM_001344728.1 → NP_001318753.1  RGPR-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FGK8
      UniProtKB/TrEMBL
      A0A178UT59

    3. NM_001344729.1 → NP_001330152.1  RGPR-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9X0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGK8.1

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