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    Actin binding Calponin homology (CH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815018, updated on 28-Oct-2024

    Summary

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    Official Full Name
    Actin binding Calponin homology (CH) domain-containing protein
    Primary source
    TAIR:AT2G04750
    Locus tag
    AT2G04750
    See related
    Araport:AT2G04750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I8.21; F28I8_21
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (1659762..1662748, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ankyrin repeat family protein Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Actin-bundling protein fimbrin serves as a new auxin biosynthesis orchestrator in Arabidopsis root tips. Liu YK, et al. New Phytol, 2024 Oct. PMID 39044442
    2. The Structurally Plastic CH2 Domain Is Linked to Distinct Functions of Fimbrins/Plastins. Zhang R, et al. J Biol Chem, 2016 Aug 19. PMID 27261463, Free PMC Article
    3. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Actin-bundling protein fimbrin serves as a new auxin biosynthesis orchestrator in Arabidopsis root tips.
      Title: Actin-bundling protein fimbrin serves as a new auxin biosynthesis orchestrator in Arabidopsis root tips.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Actin binding Calponin homology (CH) domain-containing protein
    NP_178552.1
    • Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin-like protein 2 (TAIR:AT5G35700.1); Has 4258 Blast hits to 2703 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 3436; Fungi - 331; Plants - 148; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1659762..1662748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126505.1 → NP_178552.1  Actin binding Calponin homology (CH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178552.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJ84
      UniProtKB/TrEMBL
      A0A178VSU4, A0A5S9WXH7, A0A7G2EBA6
      Conserved Domains (3) summary
      COG5069
      Location:112 → 607
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
      cd21293
      Location:117 → 232
      CH_AtFIM_like_rpt1; first calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
      cd21299
      Location:386 → 499
      CH_AtFIM_like_rpt3; third calponin homology (CH) domain found in the Arabidopsis thaliana fimbrin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ84.1

    Gene LinkOut

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