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    SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842388, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT1G60970
    Locus tag
    AT1G60970
    See related
    Araport:AT1G60970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7P1.11; T7P1_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (22447811..22449536, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 2Fe-2S ferredoxin-like superfamily protein Neighboring gene iron regulated transporter 3 Neighboring gene gibberellin 20-oxidase 4 Neighboring gene SCR-like 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104777.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    SNARE-like superfamily protein
    NP_564767.1
    • SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: leaf whorl, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 621 Blast hits to 621 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 149; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22447811..22449536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104777.4 → NP_564767.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564767.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q940S5, Q9C956
      UniProtKB/TrEMBL
      A0A5S9WN66, A0A654EJW1
      Conserved Domains (1) summary
      cd14829
      Location:8 → 143
      Zeta-COP; zeta subunit of the F-COPI complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q940S5.1

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