SBT4.12 subtilase 4.12 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: SBT4.12
Official Full Name: subtilase 4.12
Primary source: TAIR:AT5G59090
Locus tag: AT5G59090
See related: Araport:AT5G59090
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATSBT4.12; K18B18.5; K18B18_5; subtilase 4.12
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Genomic context

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See SBT4.12 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 10

Sequence:: Chromosome: 5; NC_003076.8 (23851679..23855499, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

AtSBT4.12, which encodes a subtilisin-like serine protease, is localized in the apoplast of root stele including xylem vessel and may be involved in stress responses.
Title: Identification of Arabidopsis subtilisin-like serine protease specifically expressed in root stele by gene trapping.

Submit: New GeneRIF Correction

General gene information

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NM_001037024.1

Supported by ESTs:

NM_001037025.1

Supported by ESTs:

NM_125299.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables serine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in response to jasmonic acid	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in apoplast	IDA Inferred from Direct Assay more info
located_in cytoplasm	HDA more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in nucleus	HDA more info	PubMed

General protein information

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Preferred Names: subtilase 4.12

NP_001032101.1

subtilase 4.12 (SBT4.12); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase 4.13 (TAIR:AT5G59120.1); Has 7949 Blast hits to 7012 proteins in 1178 species: Archae - 259; Bacteria - 4742; Metazoa - 67; Fungi - 276; Plants - 1907; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink).

NP_001032102.1

subtilase 4.12 (SBT4.12); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase 4.13 (TAIR:AT5G59120.1); Has 7674 Blast hits to 6768 proteins in 1166 species: Archae - 235; Bacteria - 4632; Metazoa - 64; Fungi - 256; Plants - 1885; Viruses - 0; Other Eukaryotes - 602 (source: NCBI BLink).

NP_568895.1

subtilase 4.12 (SBT4.12); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast, nucleus, cytoplasm; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase 4.13 (TAIR:AT5G59120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

23851679..23855499 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_125299.3 → NP_568895.1 subtilase 4.12 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568895.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8L7D2, Q9FGU4

UniProtKB/TrEMBL

A0A5S9YFC0, A0A654GCD7

Conserved Domains (4) summary

cd04852
Location:107 → 553

Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3

cd02120
Location:331 → 451

PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...

pfam05922
Location:32 → 107

Inhibitor_I9; Peptidase inhibitor I9

pfam17766
Location:627 → 728

fn3_6; Fibronectin type-III domain
NM_001037025.1 → NP_001032102.1 subtilase 4.12 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001032102.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YFC0, F4KHS1

Conserved Domains (4) summary

cd04852
Location:105 → 551

Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3

cd02120
Location:329 → 449

PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...

pfam00082
Location:132 → 570

Peptidase_S8; Subtilase family

pfam05922
Location:32 → 108

Inhibitor_I9; Peptidase inhibitor I9
NM_001037024.1 → NP_001032101.1 subtilase 4.12 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001032101.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9YFC0, F4KHS2

Conserved Domains (4) summary

cd04852
Location:107 → 552

Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3

cd02120
Location:331 → 451

PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...

pfam00082
Location:134 → 567

Peptidase_S8; Subtilase family

pfam05922
Location:32 → 110

Inhibitor_I9; Peptidase inhibitor I9