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    IDD16 indeterminate(ID)-domain 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839108, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD16
    Official Full Name
    indeterminate(ID)-domain 16
    Primary source
    TAIR:AT1G25250
    Locus tag
    AT1G25250
    See related
    Araport:AT1G25250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD16; F4F7.36; F4F7_36; indeterminate(ID)-domain 16
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    Genomic context

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    See IDD16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (8849034..8851790)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ENTH/VHS/GAT family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L10 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. IDD16 negatively regulates stomatal initiation via trans-repression of SPCH in Arabidopsis. Qi SL, et al. Plant Biotechnol J, 2019 Jul. PMID 30623555, Free PMC Article
    2. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. Cui D, et al. PLoS Genet, 2013. PMID 24039602, Free PMC Article
    3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102334.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gravitropism IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of stomatal complex development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of auxin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of auxin polar transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 16
    NP_173896.1
    • indeterminate(ID)-domain 16 (IDD16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 32987 Blast hits to 15964 proteins in 303 species: Archae - 1; Bacteria - 31; Metazoa - 31048; Fungi - 164; Plants - 739; Viruses - 10; Other Eukaryotes - 994 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8849034..8851790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332671.1 → NP_001321790.1  indeterminate(ID)-domain 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFD1, A0A1P8AS01, A0A384L6U9

    2. NM_001332672.1 → NP_001321791.1  indeterminate(ID)-domain 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WG74, A0A5S9VWR5, A0A654EED6
      Conserved Domains (2) summary
      sd00017
      Location:143 → 162
      ZF_C2H2; C2H2 Zn finger [structural motif]
      NF033930
      Location:271 → 368
      pneumo_PspA; pneumococcal surface protein A

    3. NM_102334.1 → NP_173896.1  indeterminate(ID)-domain 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173896.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SUX3, Q9FRH4
      UniProtKB/TrEMBL
      A0A5S9VWR5, A0A654EED6
      Conserved Domains (3) summary
      sd00017
      Location:120 → 139
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01086
      Location:254 → 313
      Clathrin_lg_ch; Clathrin light chain
      cl09111
      Location:286 → 325
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FRH4.1

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