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    GTP-binding protein, HflX [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835907, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GTP-binding protein, HflX
    Primary source
    TAIR:AT5G57960
    Locus tag
    AT5G57960
    See related
    Araport:AT5G57960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MTI20.22; MTI20_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (23462704..23466678, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel 5 Neighboring gene 26S proteasome regulatory subunit Neighboring gene DNA glycosylase superfamily protein Neighboring gene RNA polymerase II fifth largest subunit, C Neighboring gene ubiquitin-specific protease 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345282.1
    NM_125181.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GTP-binding protein, HflX
    NP_200604.1
    • GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT3G49725.1); Has 31952 Blast hits to 30531 proteins in 2948 species: Archae - 298; Bacteria - 25096; Metazoa - 510; Fungi - 190; Plants - 240; Viruses - 0; Other Eukaryotes - 5618 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23462704..23466678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125181.5 → NP_200604.1  GTP-binding protein, HflX [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200604.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEV3, A0A5S9YFP6, Q9FJM0
      Conserved Domains (1) summary
      TIGR03156
      Location:145 → 472
      GTP_HflX; GTP-binding protein HflX

    2. NM_001345282.1 → NP_001331750.1  GTP-binding protein, HflX [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEY8
    Nucleotide Protein
    Heading Accession and Version

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