U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RBL10 RHOMBOID-like protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839113, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RBL10
    Official Full Name
    RHOMBOID-like protein 10
    Primary source
    TAIR:AT1G25290
    Locus tag
    AT1G25290
    See related
    Araport:AT1G25290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBL10; ATRBL7; AtRBL8; F4F7.32; F4F7_32; RBL8; RHOMBOID-like protein 10; RHOMBOID-like protein 7; RHOMBOID-like protein 8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RBL10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (8867024..8869289)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tubby like protein 10 Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10. Lavell A, et al. Plant J, 2021 Dec. PMID 34582071, Free PMC Article
    2. A predicted plastid rhomboid protease affects phosphatidic acid metabolism in Arabidopsis thaliana. Lavell A, et al. Plant J, 2019 Sep. PMID 31062431, Free PMC Article
    3. An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development. Thompson EP, et al. J Exp Bot, 2012 Jun. PMID 22416142, Free PMC Article
    4. Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis. Xu Y, et al. Plant Physiol, 2023 Nov 22. PMID 37658850, Free PMC Article
    5. Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana. Knopf RR, et al. Plant J, 2012 Nov. PMID 22738221

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis.
      Title: Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis.
    2. Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10.
      Title: Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10.
    3. AtRBL8 and AtRBL9 are localized to chloroplast membranes; AtRBL9 is in the inner envelope membrane, AtRBL8 is in the chloroplast envelope. Knockout of both genes reduces expression of allene oxide synthase.
      Title: Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana.
    4. At1g25290 has roles in the chloroplast and in flower development.
      Title: An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_102339.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within galactolipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within phosphatidic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in phosphatidic acid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RHOMBOID-like protein 10
    NP_001185093.1
    • RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1).
    NP_173900.2
    • RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8867024..8869289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198164.2 → NP_001185093.1  RHOMBOID-like protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185093.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL65, A0A5S9VVE5
      Conserved Domains (1) summary
      pfam01694
      Location:161 → 302
      Rhomboid; Rhomboid family

    2. NM_102339.3 → NP_173900.2  RHOMBOID-like protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173900.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ICF4, F4ICF5, Q9FRH8
      UniProtKB/TrEMBL
      A0A654ECY6
      Conserved Domains (1) summary
      pfam01694
      Location:161 → 309
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ICF4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.