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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831808, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT5G03100
    Locus tag
    AT5G03100
    See related
    Araport:AT5G03100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15A17.130; F15A17_130
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (726779..728855)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Phosphatidic acid phosphatase (PAP2) family protein Neighboring gene Mto 1 responding down protein Neighboring gene protamine P1 family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction. Wang J, et al. PLoS One, 2017. PMID 28045983, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342686.1
    NM_120388.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_195930.2
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G28410.1); Has 2060 Blast hits to 2032 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 2053; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      726779..728855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120388.4 → NP_195930.2  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195930.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q501G5, Q9FYN2, Q9LYX5
      UniProtKB/TrEMBL
      A0A178UKA4
      Conserved Domains (2) summary
      sd00032
      Location:130 → 148
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:9 → 45
      F-box; F-box domain

    2. NM_001342686.1 → NP_001331434.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q501G5, Q9FYN2, Q9LYX5
      UniProtKB/TrEMBL
      A0A178UKA4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q501G5.1

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