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    OTP85 Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814827, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OTP85
    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G02980
    Locus tag
    AT2G02980
    See related
    Araport:AT2G02980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ORGANELLE TRANSCRIPT PROCESSING 85; T17M13.15; T17M13_15
    Summary
    Encodes a chloroplast RNA editing factor.
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    Genomic context

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    See OTP85 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (868359..870432)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene maternal effect embryo arrest 12 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene ribonuclease 1 Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing. Okuda K, et al. Plant J, 2014 Dec. PMID 25279799
    2. A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Hammani K, et al. Plant Cell, 2009 Nov. PMID 19934379, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CRR28, CRR21, OTP85 and OTP80 act as site-recognition factors for plastid RNA editing.
      Title: Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.
    Submit: New GeneRIF Correction

    General gene information

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    NM_126350.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_178398.1
    • ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 39959 Blast hits to 14548 proteins in 281 species: Archae - 3; Bacteria - 7; Metazoa - 132; Fungi - 233; Plants - 38891; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      868359..870432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126350.3 → NP_178398.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178398.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80613, Q8LK93
      UniProtKB/TrEMBL
      A0A178VRQ1, A0A5S9WWR2
      Conserved Domains (5) summary
      TIGR00756
      Location:298 → 331
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:298 → 325
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:196 → 224
      PPR; PPR repeat
      pfam13041
      Location:193 → 241
      PPR_2; PPR repeat family
      pfam14432
      Location:468 → 593
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LK93.2

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