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    Tesmin/TSO1-like CXC domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819645, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tesmin/TSO1-like CXC domain-containing protein
    Primary source
    TAIR:AT3G04850
    Locus tag
    AT3G04850
    See related
    Araport:AT3G04850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J14.20; T9J14_20
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (1331898..1336076, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein prenylyltransferase superfamily protein Neighboring gene Ribosomal protein S3Ae Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111357.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tesmin/TSO1-like CXC domain-containing protein
    NP_187136.3
    • Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1332 Blast hits to 671 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 0; Plants - 369; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1331898..1336076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111357.4 → NP_187136.3  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187136.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84JZ8, Q9CAV1
      UniProtKB/TrEMBL
      A0A178VLW7, A0A5S9X981, A0A654F451
      Conserved Domains (1) summary
      pfam03638
      Location:538 → 574
      TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84JZ8.1

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