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    transmembrane protein (DUF2215) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824146, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF2215)
    Primary source
    TAIR:AT3G49840
    Locus tag
    AT3G49840
    See related
    Araport:AT3G49840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (18484513..18487043)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene miscRNA Neighboring gene cysteine-rich TM module stress tolerance protein Neighboring gene telomere repeat binding factor 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PNET2 is a component of the plant nuclear lamina and is required for proper genome organization and activity. Tang Y, et al. Dev Cell, 2022 Jan 10. PMID 34822788
    2. The Inner Nuclear Membrane Protein Nemp1 Is a New Type of RanGTP-Binding Protein in Eukaryotes. Shibano T, et al. PLoS One, 2015. PMID 25946333, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339440.1
    NM_114844.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein (DUF2215)
    NP_190553.3
    • Uncharacterized conserved protein (DUF2215); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2215 (InterPro:IPR019358); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2215) (TAIR:AT5G67610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18484513..18487043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114844.4 → NP_190553.3  transmembrane protein (DUF2215) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190553.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7B7, A0A654FEE6, Q0WVK0
      Conserved Domains (1) summary
      pfam10225
      Location:165 → 438
      DUF2215; Uncharacterized conserved protein (DUF2215)

    2. NM_001339440.1 → NP_001325564.1  transmembrane protein (DUF2215) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9G3, A0A1I9LLM0
    Nucleotide Protein
    Heading Accession and Version

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