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    DNA-directed RNA polymerase III subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828101, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-directed RNA polymerase III subunit
    Primary source
    TAIR:AT4G01590
    Locus tag
    AT4G01590
    See related
    Araport:AT4G01590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15B16.1; T15B16_1
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (688813..690460, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene GRAM domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036492.1
    NM_001203723.2
    NM_116390.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit
    NP_001031569.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190652.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1).
    NP_192069.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      688813..690460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203723.2 → NP_001190652.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190652.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5Y9, Q9M123
      Conserved Domains (1) summary
      pfam11705
      Location:26 → 144
      RNA_pol_3_Rpc31; DNA-directed RNA polymerase III subunit Rpc31

    2. NM_001036492.1 → NP_001031569.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JG25

    3. NM_116390.3 → NP_192069.1  DNA-directed RNA polymerase III subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192069.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5Y9, Q9M123
    Nucleotide Protein
    Heading Accession and Version

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