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    Plant regulator RWP-RK family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818951, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant regulator RWP-RK family protein
    Primary source
    TAIR:AT2G43500
    Locus tag
    AT2G43500
    See related
    Araport:AT2G43500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NIN-like protein 8; NLP8; T1O24.24
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (18061716..18066708)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ncRNA Neighboring gene trypsin inhibitor protein 1 Neighboring gene trypsin inhibitor protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Yan D, et al. Nat Commun, 2016 Oct 12. PMID 27731416, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Genetic analysis shows that NLP8-mediated promotion of seed germination by nitrate requires CYP707A2.
      Title: NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001161101.2
    NM_001337037.1
    NM_001337038.1
    NM_001337039.1
    NM_001337041.1
    NM_001337042.1
    NM_001337043.1
    NM_001337044.1
    NM_001337045.1
    NM_001337046.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant regulator RWP-RK family protein
    NP_001154573.1
    • Plant regulator RWP-RK family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT3G59580.2); Has 665 Blast hits to 521 proteins in 81 species: Archae - 0; Bacteria - 147; Metazoa - 3; Fungi - 2; Plants - 476; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_001318414.1
    • Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT3G59580.2); Has 665 Blast hits to 521 proteins in 81 species: Archae - 0; Bacteria - 147; Metazoa - 3; Fungi - 2; Plants - 476; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18061716..18066708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337040.1 → NP_001325294.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    2. NM_001337037.1 → NP_001318414.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    3. NM_001337041.1 → NP_001325293.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2R8, A0A5S9X6Y4, A0A654F2W9

    4. NM_001337042.1 → NP_001325292.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2R8, A0A5S9X6Y4, A0A654F2W9

    5. NM_001337043.1 → NP_001325291.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    6. NM_001337044.1 → NP_001325290.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    7. NM_001337045.1 → NP_001325289.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    8. NM_001161101.2 → NP_001154573.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154573.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22864, Q8L4P4
      UniProtKB/TrEMBL
      A0A5S9X6Y4, A0A654F2W9
      Conserved Domains (2) summary
      cd06407
      Location:848 → 928
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:590 → 651
      RWP-RK; RWP-RK domain

    9. NM_001337046.1 → NP_001325288.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    10. NM_001337038.1 → NP_001325296.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9

    11. NM_001337039.1 → NP_001325295.1  Plant regulator RWP-RK family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2Q9, A0A5S9X6Y4, A0A654F2W9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22864.1

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