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    Phox1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817067, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Phox1
    Official Full Name
    Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
    Primary source
    TAIR:AT2G25290
    Locus tag
    AT2G25290
    See related
    Araport:AT2G25290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F11.12; T22F11_12
    Summary
    Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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    Genomic context

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    See Phox1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (10765702..10768734, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene AmmeMemoRadiSam system protein B Neighboring gene ncRNA Neighboring gene low-molecular-weight cysteine-rich 81 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161062.2
    NM_001202670.1
    NM_001335984.1
    NM_128086.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables myosin XI tail binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
    NP_001154534.1
    • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1); Has 5029 Blast hits to 4404 proteins in 327 species: Archae - 25; Bacteria - 208; Metazoa - 2228; Fungi - 709; Plants - 1135; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
    NP_001189599.1
    • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1).
    NP_180101.4
    • Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT4G32070.1); Has 5029 Blast hits to 4404 proteins in 327 species: Archae - 25; Bacteria - 208; Metazoa - 2228; Fungi - 709; Plants - 1135; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10765702..10768734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161062.2 → NP_001154534.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154534.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRM4, Q9SIR4
      UniProtKB/TrEMBL
      A0A178VW51, A0A5S9X188
      Conserved Domains (3) summary
      smart00666
      Location:280 → 356
      PB1; PB1 domain
      TIGR00990
      Location:52 → 171
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:52 → 80
      TPR; TPR repeat [structural motif]

    2. NM_128086.6 → NP_180101.4  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180101.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRM4, Q9SIR4
      UniProtKB/TrEMBL
      A0A178VW51, A0A5S9X188
      Conserved Domains (3) summary
      smart00666
      Location:280 → 356
      PB1; PB1 domain
      TIGR00990
      Location:52 → 171
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:52 → 80
      TPR; TPR repeat [structural motif]

    3. NM_001335984.1 → NP_001323652.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRM4, Q9SIR4
      UniProtKB/TrEMBL
      A0A178VW51, A0A5S9X188
      Conserved Domains (3) summary
      smart00666
      Location:280 → 356
      PB1; PB1 domain
      TIGR00990
      Location:52 → 171
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:52 → 80
      TPR; TPR repeat [structural motif]

    4. NM_001202670.1 → NP_001189599.1  Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189599.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IRM4, Q9SIR4
      UniProtKB/TrEMBL
      A0A178VW51, A0A5S9X188
      Conserved Domains (3) summary
      smart00666
      Location:280 → 356
      PB1; PB1 domain
      TIGR00990
      Location:52 → 171
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:52 → 80
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IRM4.1

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