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    F-box/FBD/LRR protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818873, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/FBD/LRR protein
    Primary source
    TAIR:AT2G42730
    Locus tag
    AT2G42730
    See related
    Araport:AT2G42730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7D19.27; F7D19_27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (17789404..17791582, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein Neighboring gene transcription factor Neighboring gene ribosomal protein large subunit 16A Neighboring gene DNAJ heat shock N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_001202806.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/FBD/LRR protein
    NP_001189735.1
    • F-box family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT2G42720.1); Has 2687 Blast hits to 2614 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 138; Plants - 2100; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17789404..17791582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202806.2 → NP_001189735.1  F-box/FBD/LRR protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189735.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IP72, Q0WR05, Q9SJI3
      UniProtKB/TrEMBL
      A0A5S9X6H7, A0A654F6J9
      Conserved Domains (3) summary
      smart00579
      Location:378 → 451
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:143 → 164
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:7 → 41
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WR05.1

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