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    Coatomer, beta subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829275, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Coatomer, beta subunit
    Primary source
    TAIR:AT4G31480
    Locus tag
    AT4G31480
    See related
    Araport:AT4G31480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3L17.50; F3L17_50
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15263016..15267891)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal L28 family Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Coatomer, beta subunit Neighboring gene cytochrome P450, family 83, subfamily B, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PII signal transduction protein of Arabidopsis thaliana forms an arginine-regulated complex with plastid N-acetyl glutamate kinase. Chen YM, et al. J Biol Chem, 2006 Mar 3. PMID 16377628
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203951.1
    NM_001342082.1
    NM_001342083.1
    NM_001342084.1
    NM_001342085.1
    NM_001342086.1
    NM_001342087.1
    NM_001342088.1
    NM_119297.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Coatomer, beta subunit
    NP_001320104.1
    • Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1).
    NP_194876.2
    • Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1); Has 2798 Blast hits to 2724 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 640; Plants - 392; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15263016..15267891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119297.4 → NP_194876.2  Coatomer, beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194876.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    2. NM_001342083.1 → NP_001328341.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4C2

    3. NM_001342084.1 → NP_001328338.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    4. NM_001342085.1 → NP_001328342.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    5. NM_001342086.1 → NP_001328340.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4C2

    6. NM_001342087.1 → NP_001328339.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    7. NM_001342082.1 → NP_001320104.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    8. NM_001342088.1 → NP_001328337.1  Coatomer, beta subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform

    9. NM_001203951.1 → NP_001190880.1  Coatomer, beta subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190880.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV21
      UniProtKB/TrEMBL
      A0A5S9XYC2, A0A654FUZ5
      Conserved Domains (3) summary
      pfam01602
      Location:21 → 469
      Adaptin_N; Adaptin N terminal region
      pfam07718
      Location:669 → 807
      Coatamer_beta_C; Coatomer beta C-terminal region
      pfam14806
      Location:813 → 940
      Coatomer_b_Cpla; Coatomer beta subunit appendage platform
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV21.2

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