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    TZP zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834383, updated on 18-Sep-2024

    Summary

    Official Symbol
    TZP
    Official Full Name
    zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT5G43630
    Locus tag
    AT5G43630
    See related
    Araport:AT5G43630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9D7.13; K9D7_13
    Summary
    Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth.
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    Genomic context

    See TZP in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (17526660..17530605)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pre-mRNA cleavage complex II Neighboring gene ncRNA Neighboring gene Ribosomal protein S19 family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001344493.1
    NM_123729.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    zinc knuckle (CCHC-type) family protein
    NP_199176.1
    • TZP; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343), Zinc finger, CCHC-type (InterPro:IPR001878); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17526660..17530605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344491.1NP_001330182.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YAL1, A0A654G7N4, Q9FIX7
    2. NM_001344492.1NP_001330183.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YAL1, A0A654G7N4, Q9FIX7
    3. NM_123729.3NP_199176.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199176.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YAL1, A0A654G7N4, Q9FIX7
      Conserved Domains (2) summary
      PTZ00368
      Location:604675
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      smart00719
      Location:695802
      Plus3; Short conserved domain in transcriptional regulators
    4. NM_001344493.1NP_001330181.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YAL1, A0A654G7N4, Q9FIX7