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    SGR9 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831806, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SGR9
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT5G02750
    Locus tag
    AT5G02750
    See related
    Araport:AT5G02750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9G14.60; F9G14_60; SHOOT GRAVITROPISM 9
    Summary
    Encodes an E3 ligase, SHOOT GRAVITROPISM9. Modulates the interaction between statoliths and F-Actin in gravity sensing.
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    Genomic context

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    See SGR9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (619865..621180)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein Neighboring gene Ribosomal protein S24e family protein Neighboring gene ncRNA Neighboring gene Protein phosphatase 2C family protein Neighboring gene Protein MODIFIER OF SNC1 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis E3 ligase, SHOOT GRAVITROPISM9, modulates the interaction between statoliths and F-actin in gravity sensing. Nakamura M, et al. Plant Cell, 2011 May. PMID 21602290, Free PMC Article
    2. Amyloplast displacement is necessary for gravisensing in Arabidopsis shoots as revealed by a centrifuge microscope. Toyota M, et al. Plant J, 2013 Nov. PMID 24004104
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Gravitropic mutants phosphoglucomutase (pgm) and sgr9 show abnormal amyloplast distribution and reduced gravitropism at 1 g.
      Title: Amyloplast displacement is necessary for gravisensing in Arabidopsis shoots as revealed by a centrifuge microscope.
    2. SGR9 is an important component of the gravity perception mechanism that facilitates amyloplast sedimentation in the direction of gravity.
      Title: An Arabidopsis E3 ligase, SHOOT GRAVITROPISM9, modulates the interaction between statoliths and F-actin in gravity sensing.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120353.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within gravitropism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in amyloplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_195895.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19950.1); Has 8586 Blast hits to 8564 proteins in 268 species: Archae - 0; Bacteria - 6; Metazoa - 2607; Fungi - 605; Plants - 4117; Viruses - 22; Other Eukaryotes - 1229 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      619865..621180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120353.3 → NP_195895.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195895.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXF8, Q9LZ10
      UniProtKB/TrEMBL
      A0A178UFN6, A0A5S9Y311
      Conserved Domains (2) summary
      cd00162
      Location:214 → 254
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:213 → 258
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GXF8.1

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