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    RAD9 cell cycle checkpoint control protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819713, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RAD9
    Official Full Name
    cell cycle checkpoint control protein family
    Primary source
    TAIR:AT3G05480
    Locus tag
    AT3G05480
    See related
    Araport:AT3G05480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRAD9; F22F7.7; F22F7_7
    Summary
    Involved in the regulation of DNA damage repair and homologous recombination.
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    Genomic context

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    See RAD9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (1585272..1589292)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sporozoite surface protein-like protein Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene ralf-like 22 Neighboring gene Rubber elongation factor protein (REF)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Rad17 homologue of Arabidopsis is involved in the regulation of DNA damage repair and homologous recombination. Heitzeberg F, et al. Plant J, 2004 Jun. PMID 15165187
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202886.1
    NM_001337585.1
    NM_001337586.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cell cycle checkpoint control protein family
    NP_001189815.1
    • RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552).
    NP_001319478.1
    • RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    NP_001319479.1
    • RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1585272..1589292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337585.1 → NP_001319478.1  cell cycle checkpoint control protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7M4, A0A384KV65, Q058K5, Q8RYD2
      Conserved Domains (1) summary
      pfam04139
      Location:13 → 282
      Rad9

    2. NM_001337586.1 → NP_001319479.1  cell cycle checkpoint control protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J7B9, Q8RYD2

    3. NM_001202886.1 → NP_001189815.1  cell cycle checkpoint control protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189815.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J7B7, Q8RYD2
      Conserved Domains (2) summary
      pfam04139
      Location:13 → 299
      Rad9; Rad9
      cl24017
      Location:11 → 253
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...
    Nucleotide Protein
    Heading Accession and Version

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