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    KNATM KNOX meinox protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838041, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KNATM
    Official Full Name
    KNOX meinox protein
    Primary source
    TAIR:AT1G14760
    Locus tag
    AT1G14760
    See related
    Araport:AT1G14760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10B6.16; F10B6_16; KNOX Arabidopsis thaliana meinox
    Summary
    Encodes a novel Arabidopsis KNOX gene that encodes a MEINOX domain but lacks the homeodomain and interacts with TALE-class homeodomain proteins to modulate their activities
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    Genomic context

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    See KNATM in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5084315..5085263, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene class I heat shock protein, putative (DUF1423) Neighboring gene Cyclin family protein Neighboring gene S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene MAC/Perforin domain-containing protein Neighboring gene RNA-dependent RNA polymerase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep. Piazza P, et al. Curr Biol, 2010 Dec 21. PMID 21129970
    2. KNOX lost the OX: the Arabidopsis KNATM gene defines a novel class of KNOX transcriptional regulators missing the homeodomain. Magnani E, et al. Plant Cell, 2008 Apr. PMID 18398054, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001160869.1
    NM_101345.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf proximal/distal pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    KNOX meinox protein
    NP_001154340.1
    • KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540), KNOX2 (InterPro:IPR005541); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana (TAIR:AT4G08150.1); Has 1449 Blast hits to 1449 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1449; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001154341.1
    • KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_172929.1
    • KNOX Arabidopsis thaliana meinox (KNATM); CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5084315..5085263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160868.2 → NP_001154340.1  KNOX meinox protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154340.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W828, A0A5S9UHW6
      Conserved Domains (2) summary
      pfam03790
      Location:32 → 56
      KNOX1; KNOX1 domain
      pfam03791
      Location:92 → 132
      KNOX2; KNOX2 domain

    2. NM_101345.2 → NP_172929.1  KNOX meinox protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172929.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXU1, F4HXU2, F4HXU3, Q9LQV5
      Conserved Domains (1) summary
      pfam03790
      Location:33 → 74
      KNOX1; KNOX1 domain

    3. NM_001160869.1 → NP_001154341.1  KNOX meinox protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154341.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HXU3
      Conserved Domains (1) summary
      pfam03790
      Location:33 → 55
      KNOX1; KNOX1 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HXU3.1

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