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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831286, updated on 18-Sep-2024

    Summary

    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT5G14350
    Locus tag
    AT5G14350
    See related
    Araport:AT5G14350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O22.140; F18O22_140
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (4627140..4628703, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene myb domain protein 40 Neighboring gene early nodulin-like protein 21 Neighboring gene Ubiquitin-like superfamily protein Neighboring gene CCT motif family protein

    General gene information

    NM_121439.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion  

    General protein information

    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_196939.2
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT3G46610.1); Has 4293 Blast hits to 2672 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 4078; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4627140..4628703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121439.2NP_196939.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196939.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4F1, A0A654G0Y8, F4K6R8
      Conserved Domains (4) summary
      PLN03218
      Location:96223
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:142169
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:161224
      PPR_3; Pentatricopeptide repeat domain
      pfam01535
      Location:212238
      PPR; PPR repeat
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