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    jacalin lectin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825128, updated on 18-Sep-2024

    Summary

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    Official Full Name
    jacalin lectin family protein
    Primary source
    TAIR:AT3G59590
    Locus tag
    AT3G59590
    See related
    Araport:AT3G59590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22014167..22015768)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene Plant regulator RWP-RK family protein Neighboring gene RNA polymerase Rpb8 Neighboring gene miscRNA Neighboring gene F-box family protein / jacalin lectin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jacalin lectin family protein
    NP_191518.1
    • jacalin lectin family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / jacalin lectin family protein (TAIR:AT3G59610.1); Has 1611 Blast hits to 1208 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22014167..22015768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115821.1 → NP_191518.1  jacalin lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191518.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1A9
      UniProtKB/TrEMBL
      A0A178V706
      Conserved Domains (2) summary
      smart00915
      Location:309 → 438
      Jacalin; Jacalin-like lectin domain
      pfam07734
      Location:136 → 275
      FBA_1; F-box associated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1A9.1

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