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    RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842173, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA helicase family protein
    Primary source
    TAIR:AT1G58060
    Locus tag
    AT1G58060
    See related
    Araport:AT1G58060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T15M6.7; T15M6_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    34
    Sequence:
    Chromosome: 1; NC_003070.9 (21489284..21501890, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNA helicase family protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene WEB family protein Neighboring gene ATP phosphoribosyl transferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104588.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA helicase family protein
    NP_176103.2
    • RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G58050.1); Has 14563 Blast hits to 8989 proteins in 1532 species: Archae - 4; Bacteria - 6119; Metazoa - 3212; Fungi - 1916; Plants - 1040; Viruses - 151; Other Eukaryotes - 2121 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21489284..21501890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104588.4 → NP_176103.2  RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176103.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I9Q5, Q0WTQ8, Q84VZ2, Q9C6F9
      UniProtKB/TrEMBL
      A0A178W6M1
      Conserved Domains (6) summary
      smart00358
      Location:411 → 492
      DSRM; Double-stranded RNA binding motif
      smart00847
      Location:1105 → 1182
      HA2; Helicase associated domain (HA2) Add an annotation
      COG1643
      Location:574 → 1371
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd00046
      Location:632 → 782
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:904 → 1035
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:1242 → 1387
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I9Q5.1

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