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    ARF11 auxin response factor 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819264, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF11
    Official Full Name
    auxin response factor 11
    Primary source
    TAIR:AT2G46530
    Locus tag
    AT2G46530
    See related
    Araport:AT2G46530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 11; F11C10.34
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    Genomic context

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    See ARF11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (19104632..19108486)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene fiber Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp. Varaud E, et al. Plant Cell, 2011 Mar. PMID 21421811, Free PMC Article
    2. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036471.1
    NM_130218.5
    NM_201972.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    auxin response factor 11
    NP_001031548.1
    • auxin response factor 11 (ARF11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin response factor 18 (TAIR:AT3G61830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_182176.2
    • auxin response factor 11 (ARF11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 18 (TAIR:AT3G61830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973701.1
    • auxin response factor 11 (ARF11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 18 (TAIR:AT3G61830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19104632..19108486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130218.5 → NP_182176.2  auxin response factor 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182176.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X7H4, A0A654F2I3
      Conserved Domains (3) summary
      pfam02309
      Location:472 → 584
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:124 → 224
      B3; B3 DNA binding domain
      pfam06507
      Location:250 → 329
      Auxin_resp; Auxin response factor

    2. NM_201972.1 → NP_973701.1  auxin response factor 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973701.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X7H4, A0A654F2I3
      Conserved Domains (3) summary
      pfam02309
      Location:385 → 497
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:37 → 137
      B3; B3 DNA binding domain
      pfam06507
      Location:163 → 242
      Auxin_resp; Auxin response factor

    3. NM_001036471.1 → NP_001031548.1  auxin response factor 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031548.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA6, Q0WMQ7, Q3E6N4, Q5IRX6, Q9ZPY6
      UniProtKB/TrEMBL
      A0A5S9X7H4, A0A654F2I3
      Conserved Domains (3) summary
      pfam02309
      Location:493 → 605
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:145 → 245
      B3; B3 DNA binding domain
      pfam06507
      Location:271 → 350
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZPY6.3

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