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    PLAC8 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820269, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLAC8 family protein
    Primary source
    TAIR:AT3G10980
    Locus tag
    AT3G10980
    See related
    Araport:AT3G10980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (3438212..3441299)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene senescence associated gene 20 Neighboring gene LURP-one-like protein (DUF567)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111935.6

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLAC8 family protein
    NP_187709.5
    • PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 166 Blast hits to 162 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3438212..3441299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111935.6 → NP_187709.5  PLAC8 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187709.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V928, A0A384LFK6, A0A5S9XAY0, A0A654F5X9, Q8W4N1
      Conserved Domains (2) summary
      TIGR01571
      Location:334 → 470
      A_thal_Cys_rich; uncharacterized Cys-rich domain
      pfam11204
      Location:121 → 198
      DUF2985; Protein of unknown function (DUF2985)
    Nucleotide Protein
    Heading Accession and Version

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