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    Transcription factor TFIIE, alpha subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827782, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor TFIIE, alpha subunit
    Primary source
    TAIR:AT4G20340
    Locus tag
    AT4G20340
    See related
    Araport:AT4G20340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9F13.4; F9F13_4
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (10984618..10988008)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CTP synthase family protein Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene RAB GTPase homolog E1B Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341424.1
    NM_001341425.1
    NM_118153.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor TFIIE, alpha subunit
    NP_193767.2
    • Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT1G03280.1); Has 775 Blast hits to 709 proteins in 197 species: Archae - 3; Bacteria - 16; Metazoa - 261; Fungi - 178; Plants - 106; Viruses - 31; Other Eukaryotes - 180 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10984618..10988008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118153.4 → NP_193767.2  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193767.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR48, F4JUV3
      Conserved Domains (2) summary
      smart00531
      Location:48 → 214
      TFIIE; Transcription initiation factor IIE
      cl21459
      Location:48 → 159
      HTH; Helix-turn-helix domains

    2. NM_001341424.1 → NP_001329830.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FR48, F4JUV3
      Conserved Domains (2) summary
      smart00531
      Location:48 → 214
      TFIIE; Transcription initiation factor IIE
      cl21459
      Location:48 → 159
      HTH; Helix-turn-helix domains

    3. NM_001341425.1 → NP_001329831.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8Y2, A0A654FR48
    Nucleotide Protein
    Heading Accession and Version

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