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    mediator of RNA polymerase II transcription subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    mediator of RNA polymerase II transcription subunit-like protein
    Primary source
    TAIR:AT3G52860
    Locus tag
    AT3G52860
    See related
    Araport:AT3G52860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19591848..19592768, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein Neighboring gene beta-galactosidase 2 Neighboring gene vacuolar sorting receptor homolog 1 Neighboring gene ncRNA Neighboring gene IQ calmodulin-binding motif family protein Neighboring gene monodehydroascorbate reductase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Redox regulation of the MED28 and MED32 mediator subunits is important for development and senescence. Shaikhali J, et al. Protoplasma, 2016 May. PMID 26195288
    2. Biochemical and redox characterization of the mediator complex and its associated transcription factor GeBPL, a GLABROUS1 enhancer binding protein. Shaikhali J, et al. Biochem J, 2015 Jun 15. PMID 25877331
    3. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115146.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit-like protein
    NP_190854.1
    • unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19591848..19592768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115146.6 → NP_190854.1  mediator of RNA polymerase II transcription subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190854.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFA5
      UniProtKB/TrEMBL
      A0A178VE66, A0A5S9XKA9
      Conserved Domains (1) summary
      pfam11594
      Location:44 → 142
      Med28; Mediator complex subunit 28
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFA5.1

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