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    Glycosyl hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832219, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase family protein
    Primary source
    TAIR:AT5G20940
    Locus tag
    AT5G20940
    See related
    Araport:AT5G20940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22D1.110; F22D1_110
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (7103927..7106834, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 beta subunit Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene DUF3148 family protein Neighboring gene Glycosyl hydrolase family protein Neighboring gene aldehyde oxidase 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122103.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycosyl hydrolase family protein
    NP_197594.2
    • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7103927..7106834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122103.4 → NP_197594.2  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197594.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2Y9, Q8RWM4
      Conserved Domains (3) summary
      COG1472
      Location:50 → 478
      BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
      pfam01915
      Location:415 → 621
      Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
      cl07971
      Location:52 → 378
      Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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