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    CHX16 cation/H+ exchanger 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842721, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHX16
    Official Full Name
    cation/H+ exchanger 16
    Primary source
    TAIR:AT1G64170
    Locus tag
    AT1G64170
    See related
    Araport:AT1G64170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCHX16; cation/H+ exchanger 16; F22C12.7; F22C12_7
    Summary
    member of Putative Na+/H+ antiporter family
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    Genomic context

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    See CHX16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (23814984..23818481, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0016) Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene intracellular protein transport protein USO1-like protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene 6-phosphogluconate dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant-specific cation/H+ exchanger 17 and its homologs are endomembrane K+ transporters with roles in protein sorting. Chanroj S, et al. J Biol Chem, 2011 Sep 30. PMID 21795714, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At1g64170_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At1g64170_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_105090.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sodium:proton antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cation/H+ exchanger 16
    NP_176599.2
    • cation/H+ exchanger 16 (CHX16); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, male gametophyte, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 17 (TAIR:AT4G23700.1); Has 10345 Blast hits to 10314 proteins in 2156 species: Archae - 371; Bacteria - 8080; Metazoa - 56; Fungi - 195; Plants - 675; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23814984..23818481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105090.4 → NP_176599.2  cation/H+ exchanger 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176599.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1HDT3, Q9SH67
      UniProtKB/TrEMBL
      A0A178WGB4
      Conserved Domains (3) summary
      PLN03159
      Location:19 → 794
      PLN03159; cation/H(+) antiporter 15; Provisional
      COG0475
      Location:41 → 438
      KefB; Kef-type K+ transport system, membrane component KefB [Inorganic ion transport and metabolism]
      cd00293
      Location:660 → 789
      USP_Like; Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1HDT3.1

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