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    GTC2 GTC2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826660, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GTC2
    Official Full Name
    GTC2
    Primary source
    TAIR:AT4G10670
    Locus tag
    AT4G10670
    See related
    Araport:AT4G10670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GLOBAL TRANSCRIPTION FACTOR GROUP C; T4F9.130; T4F9_130
    Summary
    Homologous to yeast SPT16, a general chromatin factor required for transcription
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    Genomic context

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    See GTC2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (6584727..6586262)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene CDC68-like protein Neighboring gene transcription factor IIB (TFIIB) family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117135.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GTC2
    NP_192805.2
    • GTC2; CONTAINS InterPro DOMAIN/s: FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: global transcription factor C (TAIR:AT4G10710.1); Has 432 Blast hits to 431 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 147; Plants - 73; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6584727..6586262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117135.2 → NP_192805.2  GTC2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192805.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JME7, Q1PEA2
      Conserved Domains (2) summary
      pfam08512
      Location:274 → 341
      Rtt106; Histone chaperone Rttp106-like
      pfam08644
      Location:7 → 148
      SPT16; FACT complex subunit (SPT16/CDC68)
    Nucleotide Protein
    Heading Accession and Version

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