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    Late embryogenesis abundant protein (LEA) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821185, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant protein (LEA) family protein
    Primary source
    TAIR:AT3G02480
    Locus tag
    AT3G02480
    See related
    Araport:AT3G02480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16B3.11; F16B3_11
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (512220..513036)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene S-adenosylmethionine decarboxylase Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ROTUNDIFOLIA like 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The LEA protein, ABR, is regulated by ABI5 and involved in dark-induced leaf senescence in Arabidopsis thaliana. Su M, et al. Plant Sci, 2016 Jun. PMID 27095403
    2. The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. Huang D, et al. J Exp Bot, 2008. PMID 18552355, Free PMC Article
    3. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results highlight the important role that ABR, (ABA-response protein, which is negatively regulated by ABI5, plays in delaying dark-induced leaf senescence.
      Title: The LEA protein, ABR, is regulated by ABI5 and involved in dark-induced leaf senescence in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111115.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Late embryogenesis abundant protein (LEA) family protein
    NP_566173.1
    • Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT5G38760.1); Has 213 Blast hits to 189 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 12; Plants - 190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      512220..513036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111115.4 → NP_566173.1  Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566173.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6M4, A0A384KWC5, Q9M892
    Nucleotide Protein
    Heading Accession and Version

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