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    RING finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835034, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING finger protein
    Primary source
    TAIR:AT5G49710
    Locus tag
    AT5G49710
    See related
    Araport:AT5G49710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K2I5.7; K2I5_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (20195303..20197419)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene miscRNA Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene glycosyl hydrolase 9A1 Neighboring gene ferric reduction oxidase 6 Neighboring gene ferric reduction oxidase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124349.4
    NM_203187.3
    NM_203188.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING finger protein
    NP_199782.3
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974916.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974917.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20195303..20197419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203188.3 → NP_974917.1  RING finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974917.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDA2, Q0WP38
      Conserved Domains (1) summary
      cl00490
      Location:82 → 142
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_203187.3 → NP_974916.1  RING finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974916.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBR0, A0A178UEL4, F4K678
      Conserved Domains (1) summary
      cl00490
      Location:82 → 142
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_124349.4 → NP_199782.3  RING finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199782.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FEX3, A1A6K7
    Nucleotide Protein
    Heading Accession and Version

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