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    CG13896 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38089, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG13896provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035159
    Locus tag
    Dmel_CG13896
    See related
    AllianceGenome:FB:FBgn0035159
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13896
    Orthologs
    all
    NEW
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    Genomic context

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    See CG13896 in Genome Data Viewer
    Location:
    61C8-61C8; 3-0.5 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (710820..711850, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (710820..711850, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene CKII-alpha subunit interactor-3 Neighboring gene long non-coding RNA:CR45411 Neighboring gene long non-coding RNA:CR43785

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
    2. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    3. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13896-PA
    CG13896-PB
    CG13896-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      710820..711850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001144395.2 → NP_001137867.1  uncharacterized protein Dmel_CG13896, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137867.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W0N2

    2. NM_001274292.1 → NP_001261221.2  uncharacterized protein Dmel_CG13896, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PGM1
      Conserved Domains (1) summary
      pfam13837
      Location:7 → 94
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. NM_138212.3 → NP_612056.1  uncharacterized protein Dmel_CG13896, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_612056.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W0N2
      Related
      FBpp0072498
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PGM1 M9PGM1
    Q9W0N2 Q9W0N2

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