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    CG13204 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36227, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13204provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0033627
    Locus tag
    Dmel_CG13204
    See related
    AllianceGenome:FB:FBgn0033627
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    13204; Dmel\CG13204
    Summary
    Predicted to enable DNA binding activity. Is expressed in germline cell; insulin secreting cell of pars intercerebralis; larval nervous system; and larval ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13204 in Genome Data Viewer
    Location:
    47F6-47F7; 2-64 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (11366710..11370287)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (7254215..7257792)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene separation anxiety Neighboring gene Gustatory receptor 47b Neighboring gene Translocon-associated protein delta Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and characterization of new alleles of quiver (qvr) that encodes an extracellular modulator of the Shaker potassium channel. Ruan H, et al. J Neurogenet, 2017 Dec. PMID 29117754, Free PMC Article
    2. Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila. Shukla V, et al. G3 (Bethesda), 2018 May 31. PMID 29669801, Free PMC Article
    3. The MADF-BESS domain factor Dip3 potentiates synergistic activation by Dorsal and Twist. Bhaskar V, et al. Gene, 2002 Oct 16. PMID 12459265
    4. Gene duplication, lineage-specific expansion, and subfunctionalization in the MADF-BESS family patterns the Drosophila wing hinge. Shukla V, et al. Genetics, 2014 Feb. PMID 24336749, Free PMC Article
    5. Network analyses reveal novel aspects of ALS pathogenesis. Sanhueza M, et al. PLoS Genet, 2015 Mar. PMID 25826266, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13204-PA
    CG13204-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      11366710..11370287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136834.2 → NP_610678.1  uncharacterized protein Dmel_CG13204, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610678.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8K2, Q7YU31
      Related
      FBpp0087229
      Conserved Domains (2) summary
      smart00595
      Location:22 → 108
      MADF; subfamily of SANT domain
      pfam02944
      Location:478 → 510
      BESS; BESS motif

    2. NM_165827.2 → NP_725042.1  uncharacterized protein Dmel_CG13204, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725042.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NNF8, Q7YU31
      Related
      FBpp0087230
      Conserved Domains (1) summary
      pfam02944
      Location:377 → 409
      BESS; BESS motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8K2 A1Z8K2
    Q6NNF8 Q6NNF8
    Q7YU31 Q7YU31

    Gene LinkOut

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