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    holliday junction resolvase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839457, updated on 18-Sep-2024

    Summary

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    Official Full Name
    holliday junction resolvase
    Primary source
    TAIR:AT1G04650
    Locus tag
    AT1G04650
    See related
    Araport:AT1G04650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1G11.9; T1G11_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (1294627..1299023, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ribonuclease P family protein / Rpp14 family protein Neighboring gene lipoyltransferase 2 Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene ncRNA Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. Fernandes JB, et al. PLoS Genet, 2018 Apr. PMID 29608566, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • At1g04650_Arabidopsis_lyrata_ssp._lyrata_CAN10 (e-PCR)
    • At1g04650_Arabidopsis_lyrata_ssp._petraea_GER10 (e-PCR)
    NM_001331492.1
    NM_100345.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of reciprocal meiotic recombination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    holliday junction resolvase
    NP_171959.2
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1294627..1299023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100345.3 → NP_171959.2  holliday junction resolvase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171959.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEL9, A0A5S9SL78, F4I5R5
      Conserved Domains (1) summary
      pfam14868
      Location:256 → 849
      DUF4487; Domain of unknown function (DUF4487)

    2. NM_001331492.1 → NP_001323014.1  holliday junction resolvase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVU0, A0A7G2DQL7
    Nucleotide Protein
    Heading Accession and Version

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