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    lncRNA:CR42862 long non-coding RNA:CR42862 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178964, updated on 17-Dec-2024

    Summary

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    Official Symbol
    lncRNA:CR42862provided by FlyBase
    Official Full Name
    long non-coding RNA:CR42862provided by FlyBase
    Primary source
    FLYBASE:FBgn0262109
    Locus tag
    Dmel_CR42862
    See related
    AllianceGenome:FB:FBgn0262109
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe1H7; BcDNA:GH06422; CG13878; CG16971; CG32477; CR32477; CR42862; Dmel\CR42862
    Old locus tag
    CG16971; Dmel_CG16971; Dmel_CR32477
    Summary
    Is expressed in several structures, including embryonic head epidermis; embryonic ventral epidermis; epithelium; and optic lobe neuroepithelial cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lncRNA:CR42862 in Genome Data Viewer
    Location:
    61B2-61B2; 3-1 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (224106..230964)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (224106..230964)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Kaz1-ORFB Neighboring gene uncharacterized protein Neighboring gene pyrexia Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation. Khyzha N, et al. Nat Methods, 2022 Nov. PMID 36192462, Free PMC Article
    2. In vivo functional characterization of the SARS-Coronavirus 3a protein in Drosophila. Wong SL, et al. Biochem Biophys Res Commun, 2005 Nov 18. PMID 16212942, Free PMC Article
    3. Genes encoding novel secreted and transmembrane proteins are temporally and spatially regulated during Drosophila melanogaster embryogenesis. Zúñiga A, et al. BMC Biol, 2009 Sep 22. PMID 19772636, Free PMC Article
    4. Drosophila melanogaster males respond differently at the behavioural and genome-wide levels to Drosophila melanogaster and Drosophila simulans females. Ellis LL, et al. J Evol Biol, 2009 Nov. PMID 19765174
    5. Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis. Schor IE, et al. Curr Biol, 2018 Nov 19. PMID 30393032, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • alternate names: anon-fast-evolving-1H7
    • lncRNA:CR42862-RA; Dmel\lncRNA:CR42862-RA; CR42862-RA; Dmel\CR42862-RA
    • lncRNA:CR42862-RB; Dmel\lncRNA:CR42862-RB; CR42862-RB; Dmel\CR42862-RB
    • lncRNA:CR42862-RC; Dmel\lncRNA:CR42862-RC; CR42862-RC; Dmel\CR42862-RC
    • lncRNA:CR42862-RD; Dmel\lncRNA:CR42862-RD; CR42862-RD; Dmel\CR42862-RD
    • lncRNA:CR42862-RE; Dmel\lncRNA:CR42862-RE; CR42862-RE; Dmel\CR42862-RE

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      224106..230964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_048207.1 RNA Sequence

      Status: REVIEWED

    2. NR_037746.1 RNA Sequence

      Status: REVIEWED

    3. NR_048204.1 RNA Sequence

      Status: REVIEWED

    4. NR_048206.1 RNA Sequence

      Status: REVIEWED

    5. NR_048205.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.