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    IDD12 indeterminate(ID)-domain 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828206, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD12
    Official Full Name
    indeterminate(ID)-domain 12
    Primary source
    TAIR:AT4G02670
    Locus tag
    AT4G02670
    See related
    Araport:AT4G02670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD12; indeterminate(ID)-domain 12; T10P11.4; T10P11_4
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    Genomic context

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    See IDD12 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (1176000..1178624, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene uncharacterized protein Neighboring gene Beige/BEACH and WD40 domain-containing protein Neighboring gene ncRNA Neighboring gene ETO1-like 1 Neighboring gene Bax inhibitor-1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116501.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 12
    NP_192176.1
    • indeterminate(ID)-domain 12 (IDD12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 45871 Blast hits to 18418 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 43560; Fungi - 264; Plants - 729; Viruses - 2; Other Eukaryotes - 1316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1176000..1178624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340394.1 → NP_001328388.1  indeterminate(ID)-domain 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4W8, A0A1P8B4I0, A0A384KUL2, A0A5S9XPB6
      Conserved Domains (1) summary
      sd00017
      Location:163 → 182
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_116501.2 → NP_192176.1  indeterminate(ID)-domain 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192176.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22759
      UniProtKB/TrEMBL
      A0A5S9XPB6
      Conserved Domains (1) summary
      sd00017
      Location:161 → 180
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22759.2

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