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    zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827658, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT4G19190
    Locus tag
    AT4G19190
    See related
    Araport:AT4G19190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18B16.160; T18B16_160
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (10493200..10496168)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene proline-rich family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118039.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc knuckle (CCHC-type) family protein
    NP_193654.2
    • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Zinc finger, CCHC-type (InterPro:IPR001878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10493200..10496168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118039.5 → NP_193654.2  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193654.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W66, Q56WA5, Q67ZS6, Q8VZ67
      UniProtKB/TrEMBL
      A0A178V4H1
      Conserved Domains (3) summary
      smart01083
      Location:48 → 83
      Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
      pfam15288
      Location:211 → 231
      zf-CCHC_6; Zinc knuckle
      NF033845
      Location:336 → 568
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZ67.1

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